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Medical microbiology, a major subset of medical microbiology, is a branch of medical science that specializes in the prevention, diagnosis, and treatment of infectious diseases. In addition, this field of science is studying various clinical uses of bacteria to improve health. There are four types of viruses that cause infectious diseases: bacteria, fungi, parasites, and bacteria, and one type of infectious protein called a prion.

  • Diagnostic tests
  • Microbial culture
  • Microscopy
  • Biochemical tests
  • Polymerase chain reaction
  • Treatments

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Microbial genetics is a field of study within microbiology and genetic engineering. Microbial genetics tests microorganisms for different purposes. Visible microorganisms are bacteria and archaea. Other fungi and protozoa are also studies used in this field. Studies of microorganisms include genotype studies and a speech system. Genotypes are inherited genes. Genetic Engineering is a field of work and study within microbial genetics. The use of integrated DNA technology is a process of this work. The process involves creating DNA molecules and reassembling them by altering the DNA sequence. That synthesized DNA is in contact with a living animal. Cloning is also an example of genetic engineering.

  • Bacteria
  • Archaea
  • Fungi
  • Protozoa
  • Viruses
  • Plasmids

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Veterinary Microbiology is concerned with bacterial and viral diseases of domesticated vertebrate animals (livestock, companion animals, fur-bearing animals, game, poultry, but excluding fish) that supply food, other useful products, or companionship. In addition, Microbial diseases of wild animals living in captivity, or as members of the feral fauna will also be considered if the infections are of interest because of their interrelation with humans (zoonoses) and/or domestic animals.

  • Animal health
  • Animal nutrition and feeding
  • Animal welfare science
  • Veterinary informatics
  • Veterinary microbiology
  • Veterinary ophthalmology
  • Veterinary pathology

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Microbe-host interactions are complex processes that are directly and indirectly controlled by a variety of factors, including the microbial introduction of certain molecular signals into the microbial environment, and the introduction of host cells receptors that recognize these pathogen signals.

  • Effect of microbiota on host physiology
  • Pathogen responses to host immunity
  • Genetics of Host-Microbe Interactions
  • Pathways
  • Host-Microbe Interactomics

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Marine Microbiology is the study of microbes (bacteria, archaea, viruses, and small eukaryotes) in the marine environment, including biodiversity, ecology, and biogeochemistry. The use of metagenomics has been instrumental in revealing the abundance and structure of the marine microbial ecosystem.

  • Epidemiology
  • Risk Assessment
  • Detection and Ecology of Pathogens in The Environment
  • Water and Wastewater Treatment
  • Disinfection
  • Disinfection By-Products,
  • Indicators of Water and Waste Quality
  • Regulatory Issues and Standard Development
  • Water Quality Surveys and Assessments
  • Monitoring
  • Microbial Toxins

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In their natural environment, plants are part of a rich ecosystem that includes many different microorganisms in the soil. It has long been known that some of these pests, such as mycorrhizal fungi or nitrogen-fixing symbiotic bacteria, play a vital role in plant function by improving mineral nutrition. However, the full range of plant-related microbes and their ability to transform agricultural products has only recently been revealed. These are associated with the rhizosphere, which is an important natural habitat for plants and bacteria. Symbiotic nitrogen-fixing bacteria include cyanobacteria Rhizobium, Bradyrhizobium, Azorhizobium, Allorhizobium, Sinorhizobium and Mesorhizobium.

  • Soil Composition
  • Mycorrhiza
  • Wetland Soils
  • Nitrogen Fixation: Root and Bacteria Interactions
  • Plant Pathogens
  • Endophytes and Plants

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Bioinformatics builds a bridge between tracking and biological data for living / living things. Once the nucleotide sequence has been determined, the first step in analyzing bioinformatics sequencing is to predict genetic predisposition by finding open reading frames (ORFs). Despite being a small field, bioinformatics has assisted both basic microbiology and biotechnology with the development of algorithms, tools, and discoveries that refine the invisible model of cellular function.

  • Genome analysis
  • Sequence analysis
  • Phylogenetics
  • Structural bioinformatics
  • Gene expression
  • Genetics and population analysis
  • Systems biology
  • Data and text mining
  • Databases and ontologies
  • Bioimage informatics

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Virology is the branch that specifically focuses on the study of viruses, encompassing their characteristics, behavior, and impact on microorganisms and living organisms. 

Parasitology is the field dedicated to the study of parasites, including their morphology, life cycles, ecology, and interactions with their hosts, as well as the mechanisms of parasitic diseases. 

Bacteriology is the branch that specializes in the study of bacteria, including their structure, genetics, physiology, classification, and their roles in various ecological and pathological processes.

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Prebiotics and probiotics each have their own role to play in the fight for better intestinal health. But to be clear, here is a helpful guide for each term:

Probiotics: Bacterial types of bacteria add to the abundance of good bacteria in your digestive system.

Prebiotics: A special plant fiber that acts as a diet for good bacteria. This promotes growth among the existing good bacteria.

So basically, probiotic-rich foods and ingredients add antibodies to your army, and prebiotics give soldiers the support they need.

  • Probiotics
  • Prebiotics
  • Digestive enzymes
  • Synbiotics

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Microbial physiology explores the biochemical processes that support microbial growth, survival, and cellular activity. Research areas include microbial metabolism, energy production, stress response, gene regulation, and adaptation to extreme environments. Applications span biotechnology, industrial microbiology, climate science, and medical research.

  • Microbiology
  • Ecosystems
  • Microbial Ecology
  • Microorganisms
  • Enzymes
  • Fermentation
  • Microbial Communities
  • Proteins

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Infections caused by food are inflammation of the stomach and intestines. Infection can occur if you eat or drink something that is contaminated with germs, viruses, or parasites. Inflammation often leads to diarrhea, nausea, vomiting, abdominal pain, stomach cramps, and sometimes fever.

  • Campylobacter.
  • Clostridium botulinum.
  • Clostridium perfringens.
  • Cyclospora cayetanensis.
  • E. Coli.
  • Listeria monocytogenes.
  • Norovirus.
  • Salmonella.

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Industrial fermentation is the deliberate use of fermentation by micro-organisms such as bacteria and fungi and eukaryotic cells such as CHO cells and insect cells, to make products more useful to humans. Ripe products serve as food and in the general industry. Other chemical substances, such as acetic acid, citric acid, and ethanol are produced by fermentation. The fertility rate depends on the combination of bacteria, cells, cellular components, and enzymes as well as temperature, pH, and oxygen levels for aerobic fermentation. Product recovery usually involves concentrating on the dilute solution. Almost all commercially produced enzymes, such as lipase, invertase, and rennet, are produced by fermented genetically modified microbes. In some cases, the production of biomass itself is objective, as is the case with single-celled proteins, baker's yeast, and the original cultures of lactic acid bacteria used in cheese making.

  • Production of biomass
  • Production of extracellular metabolites
  • Production of intracellular components
  • Transformation of substrate
  • Food fermentation
  • Ethanol fuel
  • Sewage treatment
  • Agricultural feed

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Microbiology techniques Microbial techniques are methods used to study microorganisms, including bacteria, viruses, fungi, and protists. These techniques encompass culturing, isolation, identification, biochemical testing, and sterilization or disinfection processes. Common laboratory methods include microscopy (light, compound, and electron), incubation, and molecular assays such as PCR for detecting and analyzing microbes. These techniques are essential for understanding microbial behavior, diagnosing infections, ensuring food safety, monitoring environmental contaminants, and preventing the spread of harmful pathogens. Accurate microbial testing allows timely intervention, protecting public health and preventing potential hazards.

  • Culturing and Aseptic Techniques
  • Bacteria enumeration
  • Identification of Pathogens
  • Incubation
  • Bacteria Enumeration
  • Microscopy techniques
  • Biochemical tests

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Environmental microbiology studies microorganisms and their interactions with each other, other organisms, and the environment. Microbes, some of the oldest living species on Earth, thrive in diverse habitats—from ocean depths to forests, including extreme environments. This field examines microbial roles in ecosystems, biogeochemical cycles, and their effects on human health and the environment. Environmental microbiologists also explore practical applications, such as bioremediation of oil spills, water purification, and the development of biologically active compounds for medicine and sustainable products. Recent discoveries include marine viruses that control harmful algal blooms and microbes engineered to produce safe, environmentally friendly sunscreens.

  • Spread of viruses
  • Bacteria
  • Algae
  • Fungi
  • Parasitical organisms

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Food microbiology Food microbiology is the study of microorganisms that influence food quality, safety, and processing. This diverse field investigates spoilage, probiotic, fermentative, and pathogenic bacteria, as well as fungi, yeast, viruses, prions, and parasites, and their interactions with various food and beverage products. Researchers study how these microorganisms colonize, metabolize, or degrade food, and how beneficial microbes can enhance nutritional value and safety. Food microbiology plays a critical role in public health, food preservation, product development, and ensuring safe consumption worldwide.

  • Fermentation
  • Lactococcus
  • Leuconostoc
  • Pediococcus
  • Lactobacillus
  • Streptococcus thermophiles
  • Food safety
  • Microbial biopolymers
  • Food testing

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Microbial biotechnology  also known as industrial microbiology, involves the use of microorganisms to produce commercially valuable products or perform large-scale bioprocesses. Microbes employed in these processes can be naturally occurring, selectively enhanced in laboratories, or genetically modified to optimize productivity. This dynamic field spans applications in medicine, agriculture, food production, nutrition, and environmental management. Key areas include the development of bioactive compounds, enzymes, biofertilizers, biopesticides, and bioproducts that support human health, sustainable agriculture, and industrial innovation.

  • Protein engineering
  • Functional genomics
  • Metabolic engineering
  • Metabolic design
  • Bionanotechnology
  • Biosurfactants and bioemulsifiers
  • Compatible solutes and bioprotectants
  • Green chemistry
  • Primary metabolites
  • Food, beverages, and supplements

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Pharmaceutical microbiology  is a specialized branch of microbiology focused on the application of microorganisms in drug development, quality control, and ensuring the safety of pharmaceutical products. A major contribution of this field is the discovery and production of antibiotics, which were originally derived from microbial metabolism. Advances in genetic engineering and biotechnology have enabled the development of enhanced and more effective antimicrobial drugs. Pharmaceutical microbiology also plays a key role in contamination control, sterile manufacturing, and the overall safety of healthcare products.

  • Drug safety
  • Antimicrobial activity and disinfection
  • Methods and specifications
  • Cleanrooms and controlled environments
  • Pharmaceutical products
  • Anti-infective agents

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Bioremediation is a branch of biotechnology that utilizes the use of organic matter, such as microbes and bacteria, in removing contaminants, pollutants, and toxins from soil, water, and other sources.

  • Pollutant and Xenobiotic Biodegradation
  • Surfactants and Biosurfactants On Hydrocarbon Biodegradation
  • Role of Adsorption in the Biodegradation Process
  • Enzyme and Bacterial Immobilization
  • Impact of Pollutants on The Microorganism Cells
  • Physical or Electrochemical Methods
  • Biotransformation

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Medical microbiology Medical microbiology is a vital branch of medical science focused on the prevention, diagnosis, and treatment of infectious diseases. This field examines the clinical applications of bacteria, viruses, fungi, and parasites to improve human health. It also studies prions, a type of infectious protein, and their role in disease. Medical microbiology integrates laboratory diagnostics, pathogen identification, and therapeutic strategies to support public health and clinical practice.

  • Diagnostic tests
  • Microbial culture
  • Microscopy
  • Biochemical tests
  • Polymerase chain reaction
  • Treatments

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Molecular microbiology is concerned with the cellular and biological processes of viruses and their use in the production of biotechnology products and drugs such as vaccines, antibodies. It also involves the development of the pathogenicity of microbes.

  • Microbial enzymes
  • Microbial metabolites
  • Microbial cells
  • Microbial membranes
  • Microbial pathogens
  • Molecular genetics

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Microbial ecology is the study of the interaction of microorganisms with their environment, one with another, and with plant and animal species. It includes the study of symbioses, biogeochemical cycles, and the interaction of bacteria with anthropogenic effects such as pollution and climate change.

  • Symbiosis
  • Mutualism
  • Commensalism
  • Amensalism
  • Microbial resource management
  • Antimicrobials

Agricultural Microbiology is a branch of microbiology that deals with plant-related viruses and plant and animal diseases. It also deals with the microbiology of soil fertility, such as microbial degradation and mutation in soil nutrients.

  • Plant-associated microbes
  • Microbial degradation
  • Soil Nutrient transformations
  • Arthrobacter
  • Bacillus
  • Clostridium
  • Micrococcus
  • Actinomycetes
  • Fungi
  • Protozoa

Microorganisms are the oldest living species on Earth and can be found everywhere, from the depths of the ocean to the bottom of the forest, even outside and outside. Environmental Microbiology is the study of how bacteria interact with one another and others, including their effects on the environment, the spread of germs and germs, the spread of algae, fungi and microbes and their related effects on human health and the environment. Environmental microbiology is also exploring how germs can be used to solve earth's problems. For example, an ecologist might study microbiology to clean oil spills or other contaminants or use biologically active organic compounds for medicinal purposes, sunscreens, and water purification solutions. Researchers across the US have discovered a common marine virus that can kill the red tide, a dangerous algae that has been growing in recent years. Scientists here at UF have even discovered a way to combine shinorine into a microbe, allowing the production of safe and environmentally friendly sunscreens.

  • Spread of viruses
  • Bacteria
  • Algae
  • Fungi
  • Parasitical organisms

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Evolutionary Microbiology
Systems Microbiology
Industrial Microbiology
Enzymology and Protein Engineering
Genomics, Transcriptomics and Proteomics
Microbial Biodeterioration of Materials
Cellular Microbiology and Cytology
Bioelectricity & Bioelectrical Research
Geomicrobiology
Microbial Biomass Production